PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019423.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 537aa    MW: 60822.6 Da    PI: 4.437
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019423.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS125.85.1e-391665332374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   +lL ++ e ++ g+ el   ++  l e ++p g++++Rla+ + ++     ++      + l+  ++   + ++  aa++lf++++P+ +++h +aN
  Pbr019423.1 166 HHLLKAFSESMEMGQRELQLVIMRCLAEKVNPLGQSLERLAFNLCQGFVDNQHG------DYLK--QE---SCKNFEAAFNLFYQIFPFGRLAHYAAN 252
                  578888899999999999999**************************9988888......2222..22...356777899****************** PP

         GRAS 100 qaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                   aIlea+ ++ e+vH++ fdi++G+Q   L++a a+R++    l++T+++   ++       + + eet+++L++ A+++g++++ + +   ++edl 
  Pbr019423.1 253 TAILEAIPEDvETVHVVEFDIGEGVQLSQLIEAVAKRNKT---LKVTAIKWDVKEsdevapPQWRFEETKKQLQHHARSFGLNLKVEEI---AIEDL- 343
                  *******9998**************************765...******986666678899999***********************99...44455. PP

         GRAS 191 leeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk....vvvvveqe..adh.nsesFlerflealeyysalfdsleaklp 276
                  ++e++  +     +E la n+++ l ++   +  ++    e+L+l k+l ++    +v++ +    +++ n++sF   f   + +y al++sle+++p
  Pbr019423.1 344 VSEIKKANkrggmREFLAFNSMVGLPHMR--RRRSRGLVMEFLRLAKDLLANsargIVTFGDGYacTKRgNDSSFRSFFDANVVHYKALLESLESTFP 439
                  4444333334566*************997..333444568*********7755556899999775334489*************************** PP

         GRAS 277 res.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSa 372
                  ++  e+r+++E +++++ +++     + + +er+       +    +G+++ ++s ++ ++ak +l   +s g rv  e+ +++ l W++ pLv v  
  Pbr019423.1 440 SHLgEARMVMELMFVAPYVSSQAWLDKWN-EERE-----CGNLQPLFGLESRRVSREMLMEAKDILGADSSYGVRVGgENGNEMALEWNSIPLVRVET 531
                  999899*******9999999988888877.3333.....34556789*****************************966677888***********99 PP

         GRAS 373 Wr 374
                  W+
  Pbr019423.1 532 WT 533
                  95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.767139512IPR005202Transcription factor GRAS
PfamPF035141.8E-36166533IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MMQSEMNFQS LWPYLNVTNS LVDTNEYNDQ MASTEFSSIF MASDEFSESS PFPFSTIFSV  60
ECEQFADCDN LLQVTSMAAE EFPMELGGFE PNFFIDQYEN MYPSCLEGSE GSNTLPSQQF  120
SVEGNDVWSP NSFVTSEASS MDVTSVQQSL TLPRDDMEID NEVSIHHLLK AFSESMEMGQ  180
RELQLVIMRC LAEKVNPLGQ SLERLAFNLC QGFVDNQHGD YLKQESCKNF EAAFNLFYQI  240
FPFGRLAHYA ANTAILEAIP EDVETVHVVE FDIGEGVQLS QLIEAVAKRN KTLKVTAIKW  300
DVKESDEVAP PQWRFEETKK QLQHHARSFG LNLKVEEIAI EDLVSEIKKA NKRGGMREFL  360
AFNSMVGLPH MRRRRSRGLV MEFLRLAKDL LANSARGIVT FGDGYACTKR GNDSSFRSFF  420
DANVVHYKAL LESLESTFPS HLGEARMVME LMFVAPYVSS QAWLDKWNEE RECGNLQPLF  480
GLESRRVSRE MLMEAKDILG ADSSYGVRVG GENGNEMALE WNSIPLVRVE TWTNRS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008370546.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLM5WLS00.0M5WLS0_PRUPE; Uncharacterized protein
STRINGPOPTR_0016s13050.11e-172(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-17GRAS family protein